Just Another Gibbs Additive Modeller: Interfacing JAGS and mgcv

The BUGS language offers a very flexible way of specifying complex statistical models for the purposes of Gibbs sampling, while its JAGS variant offers very convenient R integration via the rjags package. However, including smoothers in JAGS models can involve some quite tedious coding, especially for multivariate or adaptive smoothers. Further, if an additive smooth structure is required then some care is needed, in order to centre smooths appropriately, and to find appropriate starting values. R package mgcv implements a wide range of smoothers, all in a manner appropriate for inclusion in JAGS code, and automates centring and other smooth setup tasks. The purpose of this note is to describe an interface between mgcv and JAGS, based around an R function, `jagam', which takes a generalized additive model (GAM) as specified in mgcv and automatically generates the JAGS model code and data required for inference about the model via Gibbs sampling. Although the auto-generated JAGS code can be run as is, the expectation is that the user would wish to modify it in order to add complex stochastic model components readily specified in JAGS. A simple interface is also provided for visualisation and further inference about the estimated smooth components using standard mgcv functionality. The methods described here will be un-necessarily inefficient if all that is required is fully Bayesian inference about a standard GAM, rather than the full flexibility of JAGS. In that case the BayesX package would be more efficient.Comment: Submitted to the Journal of Statistical Softwar

Moments of the Wigner Distribution and a Generalized Uncertainty Principle

The nonnegativity of the density operator of a state is faithfully coded in its Wigner distribution, and this places constraints on the moments of the Wigner distribution. These constraints are presented in a canonically invariant form which is both concise and explicit. Since the conventional uncertainty principle is such a constraint on the first and second moments, our result constitutes a generalization of the same to all orders. Possible application in quantum state reconstruction using optical homodyne tomography is noted.Comment: REVTex, no figures, 9 page

Hamilton's theory of turns revisited

We present a new approach to Hamilton's theory of turns for the groups SO(3) and SU(2) which renders their properties, in particular their composition law, nearly trivial and immediately evident upon inspection. We show that the entire construction can be based on binary rotations rather than mirror reflections.Comment: 7 pages, 4 figure

Tip streaming from drops flowing in a spiral microchannel

This fluid dynamics video shows drops of water being transported by a mean flow of oil, in a microchannel shaped as a logarithmic spiral. The channel shape means that the drops are submitted to an increasing shear and elongation as they flow nearer to the center of the spiral. A critical point is reached at which a long singular tail is observed behind the drops, indicating that the drops are accelerating. This is called "Tip streaming".Comment: Abstract accompanying movie to the Gallery of Fluid Motion: APS-DFD 200

A BCS Condensate in NJL_3+1 ?

We present results from a lattice Monte Carlo study of the Nambu - Jona-Lasinio model in 3+1 dimensions with a baryon chemical potential mu=/=0. As mu is increased there is a transition from a chirally-broken phase to relativistic quark matter, in which baryon number symmetry appears spontaneously broken by a diquark condensate at the Fermi surface, implying a superfluid ground state. Finite volume corrections to this relativistic BCS scenario, however, are anomalously large.Comment: 5 pages, 3 figures, contribution to Strong and Electroweak Matter '02 (Heidelberg

Hamilton's Turns for the Lorentz Group

Hamilton in the course of his studies on quaternions came up with an elegant geometric picture for the group SU(2). In this picture the group elements are represented by ``turns'', which are equivalence classes of directed great circle arcs on the unit sphere $S^2$, in such a manner that the rule for composition of group elements takes the form of the familiar parallelogram law for the Euclidean translation group. It is only recently that this construction has been generalized to the simplest noncompact group $SU(1,1) = Sp(2, R) = SL(2,R)$, the double cover of SO(2,1). The present work develops a theory of turns for $SL(2,C)$, the double and universal cover of SO(3,1) and $SO(3,C)$, rendering a geometric representation in the spirit of Hamilton available for all low dimensional semisimple Lie groups of interest in physics. The geometric construction is illustrated through application to polar decomposition, and to the composition of Lorentz boosts and the resulting Wigner or Thomas rotation.Comment: 13 pages, Late